# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "eDNAfuns" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'eDNAfuns: Working with Metabarcoding Data in a Tidy Format'
version: 0.1.0
doi: 10.32614/CRAN.package.eDNAfuns
abstract: A series of R functions that come in handy while working with metabarcoding
  data. The reasoning of doing this is to have the same functions we use all the time
  stored in a curated, reproducible way. In a way it is all about putting together
  the grammar of the 'tidyverse' from Wickham et al.(2019) <https://doi.org/10.21105/joss.01686>
  with the functions we have used in community ecology compiled in packages like 'vegan'
  from Dixon (2003) <https://doi.org/10.1111/j.1654-1103.2003.tb02228.x> and 'phyloseq'
  McMurdie & Holmes (2013) <https://doi.org/10.1371/journal.pone.0061217>. The package
  includes functions to read sequences from FAST(A/Q) into a tibble ('fasta_reader'
  and 'fastq_reader'), to process 'cutadapt' Martin (2011) <https://doi.org/10.14806/ej.17.1.200>
  'info-file' output. When it comes to sequence counts across samples, the package
  works with the long format in mind (a three column 'tibble' with Sample, Sequence
  and counts ), with functions to move from there to the wider format.
authors:
- family-names: Gallego Simón
  given-names: Ramón
  email: ramongallego@gmail.com
repository: https://ramongallego.r-universe.dev
commit: d56354ab3cb233850f64f9ff5cb3b81bbede0f73
date-released: '2025-10-01'
contact:
- family-names: Gallego Simón
  given-names: Ramón
  email: ramongallego@gmail.com